作者LinusChen (来如春梦不多时)
看板Biotech
标题Re: [问题] 请问NCBI blasting的问题?
时间Fri Feb 9 16:29:08 2007
※ 引述《catalyst (abc)》之铭言:
: 请问在做NCBI的blasting时
: 最後跑出来的表会有
: Max score
: Total score
: Query coverage
: E value
The Expect value (E) is a parameter that describes the number of hits one can
"expect" to see just by chance when searching a database of a particular
size. It decreases exponentially with the Score (S) that is assigned to a
match between two sequences. Essentially, the E value describes the random
background noise that exists for matches between sequences.
P-values
The number of random HSPs with score >= S is described by a Poisson
distribution.
: Max ident
: 这些的意义到底是指什麽?我只知道数字越大 代表相似度越高
: 不过个别的意义有代表什麽不同的解释吗?
: 用了好久的ncbi一直没搞懂
: 谢谢指教了~
The Statistics of Sequence Similarity Scores
http://www.ncbi.nlm.nih.gov/BLAST/tutorial/Altschul-1.html
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1F:推 catalyst:谢谢解释~ 02/09 17:24